7:30 - 7:45am
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Refreshments |
| 7:45 -7:55 |
Opening Remarks Alice S. Whittemore
Professor of Epidemiology and Biostatistics
Stanford University School of Medicine |
Morning Presentation Session
Chair: Rick Baehner
Director of Pathology, Research and Development
Genomic Health, Inc. |
| 8:00 - 8:55 |
Marina Sirota (Morning Keynote Speaker)
Stanford Center for Biomedical Informatics Research
Talk:
Autoimmune Disease Classification by Inverse Association with SNP Alleles |
| 9:00 - 9:25 |
Tzu-Ming Chu
Research Statistician/Developer
JMP Genomics
Talk:
Principal Variance Components Analysis for Quantifying Variability in Genomics Data |
| 9:30 - 9:55 |
David M. Rocke
Distinguished Professor of Biostatistics
UC-Davis
Talk:
Serum Glycan Biomarkers for Diagnosis and Prognosis |
| 10:00 - 10:25 |
Joe Wiemels
Associate Professor
UCSF Comprehensive Cancer Center
Talk:
Backtracking Leukemia to Birth: Environmental Exposures and DNA Methylation Patterns in Neonatal Blood and Leukemia Cells |
| 10:30 - 10:55 |
Roberta McKean-Cowdin
Assistant Professor of Research
USC Norris Cancer Center
Talk:
Association Between Polymorphisms in DNA Repair Genes and Glioblastoma |
| 11:00 - 11:25 |
Jimmy T. Efird
Associate Professor
Center for Health of Venerable Populations, University of North Carolina
Talk: Detecting Gene-Environment Interactions in Microarray Association Studies |
Morning Workshop/Tutorial Session
Chair: Raymond Wan President
Raymond Wan & Associates, Inc. |
| 8:00 - 8:55 |
Eric Suess
Chairperson
CSUEB Dept. of Statistics
Talk:
Tutorial on "R" Programming Language |
| 9:00 - 9:55 |
Martin Morgan
Director, Bioinformatics Shared Resources
Fred Hutchinson Cancer Research Center
Talk:
Tutorial on Bioconductor |
| 10:00 - 10:25 |
Duncan Temple Lang
Associate Professor of Statistics
UC-Davis
Talk: R-Bridges and the Omegahat Project |
| 10:30 - 11:25 |
Eugenia Bastos
Analytic Consultant
SAS Institute
Talk:
IML
Studio/SAS-R |
Lunchtime 1:1 Software Demonstrations Chair:
Sy Truong
President Meta-Xceed, Inc. |
| 11:30 - 12:55 |
Open Floor Demos and 1:1 Interaction with Various Software Developers |
Symposium Luncheon (The Left Bank Restaurant, 635 Santa Cruz Ave. - Fee Event) |
| 11:30 - 12:55 |
Lunch served |
| 12:20 - 12:45 |
Rick Baehner
Director of Pathology, Research and Development
Genomic Health, Inc.
Talk: Gene Expression Assays for Breast Cancer |
Afternoon Presentation Session 1 (Menlo Room) |
|
Chair: Mike
Wulfsohn
Vice-President Biometrics
Gilead Sciences |
| 1:00 - 1:55 |
Sandrine Dudoit (Afternoon Keynote Speaker)
Chairperson
UC-Berkeley Division of Biostatistics
Title:
Statistical Methods for the Analysis of High-Throughput Sequencing Data |
| 2:00 - 2:25 |
Zemin Zhang
Senior Scientist, Dept. of Bioinformatics
Genentech
Title: Whole Genome Sequencing |
| 2:30 - 2:55 |
Martin Morgan
Director, Bioinformatics Shared Resources
Fred Hutchinson Cancer Research Center
Talk:
R/Bioconductor for High-Throughput Genomic Analysis |
Afternoon Presentation Session 2 (Menlo Room) |
|
Chair: Philip W. Lavori
Chairperson, Dept. of Health Research and Policy
Stanford University School of Medicine |
| 3:00 - 3:25 |
Josh Stuart
Associate Professor
UCSC Center for Biomolecular Science and Engineering
Talk:
Integrated Analysis of Cancer Pathways with the UCSC Cancer Genomics Browser |
| 3:30 - 4:25 |
Daniela Witten (Collaborative project with Robert Tibsirani)
Department of Statistics
Stanford University School of Medicine
Title: Correlate:
A Method for the Integrative Analysis of 2 Genomic Data Sets |
| 4:30 - 5:00 |
Mark Segal
Director
UCSF Center for Bioinformatics & Molecular Biostatistics
Title:
Re-cracking the Nucleosome Positioning Code
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Afternoon Workshop/Tutorial Session (Los Altos Room)
Chair: Eugenia Bastos
Analytic Consultant
SAS Institute, Inc.
|
| 1:00 - 1:55 |
Laura Higgins
Genomics Application Scientist
SAS Institute
(JMP)
Talk: Basic Reporting Tools, Graphics, and Statistics in JMP Software with Applications in Genomics |
| 2:00 - 2:55 |
Jordan Hiller Genomics Application Scientist
JMP Genomics
Talk:
Technical Tutorial on JMP Genomics |
| 3:00 - 3:55 |
Kirk Lafler
President
Software Intelligence Corporation
Talk:
Tutorial on SQL and Data Federation for Genomics Researchers |
| 4:00 - 4:55 |
Sy Truong
President
Meta-Xceed, Inc.
Talk: iPhone Apps Workshop for Running Bioinformatics and Genomics Applications |
| 5:00 - 5:45 |
Closing Reception/Mixer (Landing Area adjacent to Atherton Room)
Sponsored by Genentech and Advanced Clinical Services |
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We kindly thank the WUSS LUG Program and the following organizations for their assistance and support for this symposium: |
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